Welcome to the cellmlmanip documentation

Cellmlmanip is hosted on GitHub, where you can find the code and installation instructions.

This page provides the API, or developer documentation for cellmlmanip.

• Index

• Search Page

Contents

• Reading CellML
  • load_model()
  • XmlNs
  • with_ns()
  • Parser
    • Parser.parse()
    • Parser.transform_constants()
  • Transpiler
    • Transpiler.set_mathml_handler()
    • Transpiler.parse_string()
    • Transpiler.parse_tree()
    • Transpiler.transpile()
• The Model API
  • Model
    • Model.variables()
    • Model.get_free_variable()
    • Model.get_state_variables()
    • Model.get_derivatives()
    • Model.get_derived_quantities()
    • Model.get_display_name()
    • Model.is_state()
    • Model.is_constant()
    • Model.get_variable_by_name()
    • Model.get_variable_by_cmeta_id()
    • Model.get_variable_by_ontology_term()
    • Model.get_variables_by_rdf()
    • Model.get_rdf_value()
    • Model.get_rdf_annotations()
    • Model.get_ontology_terms_by_variable()
    • Model.has_ontology_annotation()
    • Model.has_cmeta_id()
    • Model.get_definition()
    • Model.get_value()
    • Model.get_equations_for()
    • Model.graph
    • Model.graph_with_sympy_numbers
    • Model.get_unique_name()
    • Model.add_variable()
    • Model.remove_variable()
    • Model.add_equation()
    • Model.remove_equation()
    • Model.create_quantity()
    • Model.add_cmeta_id()
    • Model.add_rdf()
    • Model.transfer_cmeta_id()
    • Model.convert_variable()
    • Model.find_variables_and_derivatives()
    • Model.remove_fixable_singularities()
  • Quantity
  • Variable
    • Variable.model
    • Variable.rdf_identity
    • Variable.cmeta_id
  • DataDirectionFlow
  • VariableType
  • create_rdf_node()
• Units
  • UnitStore
    • UnitStore.Unit
    • UnitStore.Quantity
    • UnitStore.add_unit()
    • UnitStore.add_base_unit()
    • UnitStore.is_defined()
    • UnitStore.get_unit()
    • UnitStore.format()
    • UnitStore.is_equivalent()
    • UnitStore.evaluate_units()
    • UnitStore.get_conversion_factor()
    • UnitStore.convert()
    • UnitStore.add_conversion_rule()
    • UnitStore.evaluate_units_and_fix()
    • UnitStore.convert_expression_recursively()
  • UnitCalculator
    • UnitCalculator.traverse()
    • UnitCalculator.convert_expression_recursively()
  • UnitError
    • UnitError.add_context()
  • UnexpectedMathUnitsError
  • InputArgumentsInvalidUnitsError
  • InputArgumentsMustBeDimensionlessError
  • InputArgumentMustBeNumberError
  • BooleanUnitsError
  • UnitConversionError
• Code generation
  • Printer
    • Printer.doprint()
    • Printer.emptyPrinter()